Update- they came out today, guy thinks the clutch pedal works as normal, I don’t really agree. I run large Deeres 100s of hours per year, and the clutch on this tractor just doesn’t feel right. Sometimes it feels just fine to me and other times if I had to creep ahead 6” or so there is now way I could do it, I very slowly let of the clutch and the tractor jumps a few feet.
He acknowledged the transmission clunk, but the pto seemed ok aside from a little noise upon start up. He said he was gonna recalibrate the pto, 3 pt, and change the high pressure trans filter. I had to leave before he finished up. Just got back and took the tractor for a drive, all issues still remain. PTO seemed better initially but after driving the tractor around for a half hour or so and trying again it started making loud noises and throwing the code again.
EDIT: I just got off the phone with the service manager, there was bunch of chunks of brass and metal in the filter. They are gonna come get it next week and tear into it. Wish they would have told me that before I just drove it around for an hour LOL oh well, I’ll be happy as long as they get it taken care of.