Here is the video of the start up after swapping the rod caps. I had already primed the injectors, which is why it starts so quickly this time.
[ame=http://www.youtube.com/watch?v=ZPimVZDs4mg]Yanmar 336D - Head gasket blows at start up after rebuild - YouTube[/ame]
The injector timing was only barely off. I ended up usoing two shims, which was the same number as the old shims, but these were new, so they laid much more flat (the old ones had some old crimps in them).
All three injectoin pumps pump at exactly 25BTDC, as is spec. It was a lot easier once I took a screw driver to the belt pulley and found the timing notches.
did you remove the head & try to use the same gasket ??
I wish, then I wouldn't be out $65+shipping.
1st pass.... 43 ft lbs
2nd pass...87 ft lbs
Final pass.... 116- 130 lbs
Did that. Torqued to 124lbs as I wasn't too sure as to the accuracy of the torque wrench.
there is also a tightening sequence in the book
Followed it to the bolt.
I have a feeling it was the #1 cylinder liner, as it is now slightly lower than the two new ones. Not really sure what I can do about it, though. Sand the tops of the two new ones until they all match?
Seeing as I'll have the head off, I guess I'll go ahead and get it flattened by the machine shop. I was really hoping to avoid that, as I didn't want to ruin the exhaust manifold bolts trying to get it off. They are nubs at best at this point (corrosion).
Did I mention this sucks and how disappointed I am

- Yet another example of "If you don't have the time or money to fix it right this time, where will you get it when you have to redo it all?"
At least now I'll be able to have the injectors tested, seeing as they'll be off.. again.