Sorry but I don't see a intake valve leaking causing the extra oil in the base! We do see injection pump shaft seals leaking that could give you a quart in thirty minutes!
We do see cylinders that glaze over do to unburnt fuel running by the rings that will add to the base, but not that much!
The lower compression could be from glazed walls, that much oil being added to the base, I'd be looking at the pump shaft seal! To have number three hole only regardless of the injector installed, I'm back to the pump again!
To have the intake valve issue as a possible, warm the engine to operating temps and grab a spray bottle from your wife and spray water into the air intake hose at a rate not enough to stall the engine at 1/3rd but to allow it to steam off any potential carbon. To have had a issue like this long enough could be that carbon is holding open the valve unless you checked it with a dial indicator that it is traveling the proper distance.