If there IS fuel in the bowl on shutdown and the solenoid test light remains lit, that leads me back to airflow. How thoroughly have you checked for partially obstructed, collapsed or restricted air intake hoses?
With a gasoline engine, blocked exhaust lines can cause problem with back pressure. Can that be an issue with diesels?
Completely checked out and looks like brand new parts. Nothing is collapsing on intake and I even disconnected the air flow sensor to alert to you dirty filters.