Jim,
I know all about pains in the ***! *See my post on 4 speed rebuild....
The cylinder is probably a 2.5 inch internal diameter (the one that counts). The ROD is 1.5". The piston is bolted to the bottom of the rod and is where the packing is located. Also packing at the top on the gland nut that keeps the fluid from leaking out onto the ground.
You could probably get the parts and pieces for 2/3 to 1/2 the price, but I would probably just get it from Kubota. Time saved is money saved and that will save some time. As far as risk, once you do a cylinder you will better see that there is really not much risk!
You should also measure the distance between the pin holes and get a "pin spanner" that fits exactly or better an adjustable one. Found on ebay or tool places for about $40-50. You may also want to ask the kubota parts guy to tell you the size nut on the rod (inside the cylinder) so you can be sure you have a socket that size. My old books say to use a pull spring scale and a 6' bar to get the high torque readings. 50# pull by a 6' bar = 300 foot-lb torque. You should also have a piston ring compresser. I use the type that is ratchetable down. 10-15 bucks at NAPA and the like. That will help in getting the piston back without forcing. Use lots of clean hyd fluid to lube it on the way in. I use the same method as setting a hammer head on a handle. Start the rod/piston into the cylinder, then pick up the cylinder and drop the it 5-6" onto a chunk of wood. The rod will gently go down and the compressor will be stopped as it is too big. Sounds complex, but it's easy.
If you are having trouble getting a sturdy place to apply the torque to undo the piston nut or gland nut, use the Back Hoe mounts.
Whew ... I am wordy today!! (sorry)
jb