Condensation is the usual source for water contamination in the hydraulic fluid. If you changed fluid, did you warm up the tractor and exercise all the hydraulics (3 pt, loader, backhoe, etc) before you drained it and after you drained it? You'll have contaminated fluid in the actuators. You also have to let a lot of these drain overnight to get all the old contaminated oil out. Some folks add denatured alcohol to the old oil to get the water out.