I've done lots of valve adjustments on all kinds of engines. Mostly motorcycle engines. Heck, when I had my little Kawi 250R, I used to check and adjust it every year to spec.
There isn't much difference except more valves. Just follow what it states in the service manual to the T and dot your I's. Make sure you know your TDC AKA 1TC-- EXACTLY.
I believe most Kubota diesel engines will get looser and they need to be tightened.
I remember it was the reverse on my 250R it would tighten as time went on with engine use.
Also, to adjust some engines, you need to buy a valve lash shim kit. I don't think Kubota diesels have that... but always check your SM.
TIPS --
*The valve clearance must be checked and adjusted when engine is cold.
*Remove glow plugs to make turning the engine easier by hand.
*Your valve clearance shouldn't be off much. So you should be able to rotate the engine by hand and use slimmer feeler gauge until the valve doesn't have pressure, then look to see where your TDC (1TC) is. You can see how much it has either loosened or tightened by using the appropriate feel gauge. THEN see how out of spec it is, and adjust if necessary. Not all of them will need to be adjusted.
*There are usually 3 marks on the flywheel 1TC, 10 and 20. Make sure you are on the right marking 1TC at all times after rotating 360 degrees.
*The sequence of cylinder numbers is given as No.1, No.2 No.3 and No.3, etc, starting from the gear case side.
*After adjusting the valve clearance, secure the adjusting screw with the lock nut. <-- DON'T GORILLA TIGHTEN IT!
*Generally most engines intake and exhaust valves take the same measurement. However, double check your SM! DON'T ASSUME!
When I did my BX2200 with the D905, it was a hair loose (like 0.002") on cylinders 1 and 3 to my likening (made up my mind and went to 0.006", right in the middle of the SM spec). So I tightened it up to spec to the SM.
Then the most important thing -- go through and DOUBLE CHECK! Even TRIPLE CHECK. Even leave the shop and come back an hour later and check again before putting valve cover back on.
Likely you won't mess anything up, but still. It's an expensive engine.
Again, I only provided advise -- always consult your tractor engine's service manual...