When you reassemble the box, the top cover with he race should hold the bearing, on the steering shaft in a bit of pre-load against the bearing on the bottom of the shaft, against the race in the bottom of the box. Use shims around the top cover to control preload. Once you have the top cover on, if the steering wheel can rise and fall, you do not have any preload.. that is.. there is bearing clearance between the bearing and race. Not sure how this happened unless the top or bottom race slipped or wore BADLY or the beaing is not the correct one. ( nylon - plastic bearings will not fit correctly inthe oem application.. ).
If this wasn't what you were describing, please repost and I'll try to help.
Also.. when you say 'yoke'.. are you refering to the ballnut?
If so.. did you remove the ballnut and shaft from the box? If so, did you get the ballnut centered back on the shaft, and then have it engage the left sector with the left sectors 'large' master spline standing straight up, and then have the left sector engege the right sector with the right sector set so that there were equal number of teeth above and below the area the splines joined? ( I&T fo-19 and FO-4 manuals show this real good, and explain the secot / ballnut realignment much better than I can. ).
Let me know if you need any more info, or if we need to look at this furthere to figure it out.
( Also.. if you did remove the ballnut and shaft.. did you make sure the lower bearing stayed ont he shaft.. the keepers are weak.. lower bearing might have slippe doff, leaving about 1/4 to 3/8" extra clearance, and noway to establis some preload ont he shaft.. etc..
Soundguy