When dry camping, for now, the batteries will be charged with a generator, during generator hours. Eventually I would like to do it with solar panels. I will also need to upgrade the converter/charger to a better one, a step down type. That will be before the solar, but will be a little bit in the future. The better charger will be to add longevity to battery life.
This is a 5th wheel, so the only batteries involved are for the 5th wheel. Even if I just stop for short overnight, I usually unplug from the truck.
As for separating them, I will be looking more for a typical battery cutoff switch, if one is heavy duty enough, for a 200 amp circuit.