Actually I believe it is a linkage/cable situation that basically takes over for your throttle lever, and links it to the pedal. So whatever the throttle lever on the dash does to control fueling, is now replicated by the hydro pedal. I don't know if the throttle cable goes to a sensor for the ECU control of fueling; I think it actually goes up to the common rail fuel pump as a physical control.
In other words, it's a well engineered, complex linkage arrangement, not a basic electronic hack.
I stopped using my linked pedal because it occurred to me, and was pointed out by others, that constantly ramping the engine speed up and down is likely to create a lot more soot loading in the DPF, and lead to more frequent forced regenerations. Think about how when you jack the throttle lever up real quick, you often see a puff of black smoke on any older or non DPF diesel. Your tier 4, DPF diesel is still doing this also, but the DPF is catching all that soot and clogging up until it regens.
So I just leave my engine speed around 2000-2500 rpm now all the time depending on what I am doing, how hard I am pushing the tractor, or how much ground speed I need. I do still throttle down to idle when hopping off to swap implements or do some quick hand work on the ground, as I can't bear to hear an engine screaming away for no reason for minutes at a time.