Do you have a wiring diagram from the original tractor owner's manual which you could post here.
Most of the garden tractors have a complex multi function switch that engages the front clutch but only after a number of remote safety switches are closed.
It also controls when the starter gets power.
Friends who have these machines are told by me early in their new tractor's life: Don't leave it outside. All the switches, although expensive to buy, are not made to resist water and dirt.
In the beginning they follow my advice but gradually they stop and the machine sits in the rain, the snow. Then one day they call me because it wont start, the mower deck wont engage and want me to fix it.
The answer is usually: "get your credit card and we will go to the dealer to by the multi-function switch." The parts guy hands them a little box and asks for a significant amount of money.
Usually the new switch does not come with the handle which has to be removed from the old switch.
Do you have a test light like this one on Amazon for approx. $12? Automotive repair shops have them. Don't buy a super cheap one because you will always be trying to figure out is something wrong with the test light or in the circuit I am testing. With this basic tool I can help you solve most problems. If you are just jumping around in the dark you will drive yourself crazy.
Amazon.com: ATD Tools 5513 Heavy-Duty Circuit Tester: Automotive
Don't start taking things apart again. We need to identify where the problem is and then focus your energies there.
Did the clutch come with the repower engine or is it off the old engine?
Looking forward to some answers from you.
I have come back to edit my post by adding some wiring diagrams from a cub cadet which shows how the various circuits actually interact with each other.
The size is probably too large and you will have to scroll sideways. Best to copy the images into Paint and rotate them for easier viewing.
Some tractors incorporate a flyback diode in the wiring harness. This is easily blown by connecting the battery cables backwards, by connecting jumper cables the wrong way. We need to determine if you have one on your machine.
Here are some photos :
Dave
M7040